HWE.chisq               Perform Chi-Square Test for Hardy-Weinberg
                        Equilibrium
HWE.exact               Exact Test of Hardy-Weinberg Equilibrium for
                        2-Allele Markers
HWE.test                Estimate Disequilibrium and Test for
                        Hardy-Weinberg Equilibrium
LD                      Pairwise linkage disequilibrium between genetic
                        markers.
as.factor               Undocumented functions
ci.balance              Experimental Function to Correct Confidence
                        Intervals At or Near Boundaries of the
                        Parameter Space by 'Sliding' the Interval on
                        the Quantile Scale.
diseq                   Estimate or Compute Confidence Interval for the
                        Single-Marker Disequilibrium
expectedGenotypes       Construct expected genotypes/haplotypes
                        according to known allele variants
genotype                Genotype or Haplotype Objects.
gregorius               Probability of Observing All Alleles with a
                        Given Frequency in a Sample of a Specified
                        Size.
groupGenotype           Group genotype values
homozygote              Extract Features of Genotype objects
locus                   Create and Manipulate Locus, Gene, and Marker
                        Objects
makeGenotypes           Convert columns in a dataframe to genotypes or
                        haplotypes
order.genotype          Order/sort genotype/haplotype object
plot.genotype           Plot genotype object
power.casectrl          Depreciated functions
print.LD                Textual and graphical display of linkage
                        disequilibrium (LD) objects
summary.genotype        Allele and Genotype Frequency from a Genotype
                        or Haplotype Object
write.pop.file          Create genetics data files
