blt chrom-lens(1)

SYNOPSIS

blt chrom-lens < file.fasta

DESCRIPTION
blt chrom-lens Generates TSV (tab separated values) output containing chromosome names and lengths as required by kallisto and other tools. Since the lengths are taken directly from the FASTA reference file, this eliminates the need to locate and trust other sources of this information.

EXAMPLES
blt chrom-lens < file.fasta
xzcat file.fasta.xz | blt chrom-lens

SEE ALSO
blt(1)

AUTHOR
J. Bacon