Keywords: ProFit

Next: Introduction and Methodology

# ProFit V2.2

Dr. Andrew C.R. Martin,
University of Reading

Document First Written: 25th July, 1996 (University College London)
Last updated: 20th March, 2001

- Introduction and Methodology
- Starting the program
- Reading Structures
- Getting Help
- Fitting Structures
- Specifying Atom Subsets
- Specifying Zones
  - Sequence Alignment
  - Reading an Alignment
  - Limiting Zones Read From an Alignment
  - Iterative Updating of the Fitting Zones
- Multiple Structure Fitting
  - Specifying Zones With Multiple Structure Fitting
- Calculating the RMSd Over Other Zones and Atoms
- Obtaining Output
  - The Fitted Structure
  - Centering the Coordinates
  - Details of the Fitting
  - By-residue RMS Deviation
- Modifying the Fit
- Miscellaneous Commands
- Command Summary
- Copyright
- How do I Reference ProFit?
- About this document ...